Man pages for cstubben/pmcXML
Tools to parse full text XML documents from PMC Open Access
| collapse2 | Collapse a data.frame |
| findGenes | Find gene names |
| findSpecies | Find species names |
| findTags | Find locus tags |
| getSupp | Get supplmentary tables |
| guessTable | Guess table formats |
| listToSolr | Convert list to Solr XML |
| meshTerms | List MeSH terms in Pubmed |
| ncbiPMC | Search NCBI PMC database |
| parseTags | Parse locus tags |
| path.string | Print path string |
| pdf2df | Convert pdf tables to data.frames |
| pmcLoop | Loop through PMC search results |
| pmcMetadata | Get PMC metadata |
| pmcOAI | Download Open Access articles from PMC |
| pmcRef | Format PMC references |
| pmcSupp | List and read PMC supplementary files |
| pmcTable | Format PMC tables as data.frames |
| pmcText | Split PMC xml into subsections |
| pmcXML-internal | Internal pmcXML functions |
| readMarkdown | Read markdown file |
| read.xls2 | Read Excel files |
| read.xls.all | Read all sheets in Excel files |
| repeatSub | Repeat table subheadings |
| searchPMC | Search PMC text and tables |
| seqIds | Expand tag pairs |
| splitP | Split paragraphs into sentences |
| unabbrev | Unabbreviate genus names |
| writeLocus | Write mentions to file |
| yplocus | Yersinia pestis locus tags |
