yplocus: Yersinia pestis locus tags

In cstubben/pmcXML: Tools to parse full text XML documents from PMC Open Access

Description

Yersinia pestis CO92 locus tags

Usage

data(yplocus)

Format

A vector with 4087 tags chr [1:4087] "YPO0001" "YPO0002" "YPO0003" "YPO0004" "YPO0005" "YPO0006" "YPO0007" "YPO0008" "YPO0009" "YPO0010" ...

Details

A vector of locus tags in the RefSeq GFF3 file. See example for details

Source

ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621

Examples

data(yplocus)
head(yplocus)
table(gsub("([^0-9]+)[0-9]+.*", "\1", yplocus))

## Not run: 
org <- "Yersinia_pestis_CO92_uid57621"
ypgff <- read.ncbi.ftp( org, "NC_003143.gff")
yplocus <- values(ypgff)$locus

## End(Not run)

cstubben/pmcXML documentation built on May 14, 2019, 12:25 p.m.