findSpecies: Find species names
In cstubben/pmcXML: Tools to parse full text XML documents from PMC Open Access
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Find species in italics within PMC XML documents
Usage
1
findSpecies(doc )
Arguments
doc
XML document from PMC
Details
Finds text within italic tags and then checks for possible species by matching two words starting with a capital letter, excluding some common terms like "P value" and "In silico". Also replaces genus abbreviations by matching species names using unabbrev
Value
A vector of species names
Author(s)
Chris Stubben
See Also
Examples
1
2
3
4
5
## Not run:
doc <- pmcOAI("PMC2231364" )
table2(findSpecies(doc))
## End(Not run)
cstubben/pmcXML documentation built on May 14, 2019, 12:25 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Find species in italics within PMC XML documents
Usage
1 | findSpecies(doc )
|
Arguments
doc |
XML document from PMC |
Details
Finds text within italic tags and then checks for possible species by matching two words starting with a capital letter, excluding some common terms like "P value" and "In silico". Also replaces genus abbreviations by matching species names using unabbrev
Value
A vector of species names
Author(s)
Chris Stubben
See Also
Examples
1 2 3 4 5 | ## Not run:
doc <- pmcOAI("PMC2231364" )
table2(findSpecies(doc))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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