API for ctlab/fgsea
Fast Gene Set Enrichment Analysis
| Global functions | |
|---|---|
| .stopf | Source code |
| addGesecaScores | Source code |
| calcGesecaScores | Source code |
| calcGseaStat | Man page Source code |
| calcGseaStatBatch | Source code |
| calcGseaStatBatchCpp | Man page Source code |
| calcGseaStatCumulative | Source code |
| calcGseaStatCumulativeBatch | Source code |
| checkGesecaArgs | Source code |
| collapsePathways | Man page |
| collapsePathwaysGeseca | Man page |
| collapsePathwaysORA | Man page Source code |
| cowplotLabel | Source code |
| cowplotText | Source code |
| exampleExpressionMatrix | Man page |
| examplePathways | Man page |
| exampleRanks | Man page |
| fgsea | Man page Source code |
| fgseaLabel | Man page Source code |
| fgseaMultilevel | Man page Source code |
| fgseaMultilevelCpp | Source code |
| fgseaSimple | Man page Source code |
| fgseaSimpleImpl | Man page |
| fora | Man page Source code |
| geseca | Man page Source code |
| gesecaCpp | Source code |
| gesecaPreparePathways | Source code |
| gesecaSimple | Man page Source code |
| gesecaSimpleImpl | Source code |
| getGesecaLeadingEdge | Source code |
| getGesecaLeadingEdge2 | Source code |
| gmtPathways | Man page Source code |
| mapIdsList | Man page Source code |
| multilevelError | Man page Source code |
| multilevelImpl | Man page Source code |
| plotCoregulationProfile | Man page Source code |
| plotCoregulationProfileReduction | Man page Source code |
| plotCoregulationProfileSpatial | Man page Source code |
| plotEnrichment | Man page Source code |
| plotEnrichmentData | Man page Source code |
| plotGesecaTable | Man page Source code |
| plotGseaTable | Man page Source code |
| preparePathways | Source code |
| preparePathwaysAndStats | Source code |
| reactomePathways | Man page Source code |
| valueToExpExpression | Source code |
| writeGmtPathways | Man page Source code |
