plotCoregulationProfile: Plots expression profile of a gene set

In ctlab/fgsea: Fast Gene Set Enrichment Analysis

Plots expression profile of a gene set

Description

Plots expression profile of a gene set

Usage

plotCoregulationProfile(
  pathway,
  E,
  center = TRUE,
  scale = FALSE,
  titles = colnames(E),
  conditions = NULL
)

Arguments

pathway	Gene set to plot.
E	matrix with gene expression values
center	a logical value indicating whether the gene expression should be centered to have zero mean before the analysis takes place. The default is TRUE. The value is passed to scale.
scale	a logical value indicating whether the gene expression should be scaled to have unit variance before the analysis takes place. The default is FALSE. The value is passed to scale.
titles	sample titles to use for labels
conditions	sample grouping to use for coloring

Value

ggplot object with the coregulation profile plot

ctlab/fgsea documentation built on April 23, 2024, 2:54 p.m.