plotEnrichment: Plots GSEA enrichment plot. For more flexibility use...
In ctlab/fgsea: Fast Gene Set Enrichment Analysis

plotEnrichment

R Documentation

Plots GSEA enrichment plot. For more flexibility use 'plotEnrichmentData' function.

Description

Plots GSEA enrichment plot. For more flexibility use 'plotEnrichmentData' function.

Usage

plotEnrichment(pathway, stats, gseaParam = 1, ticksSize = 0.2)

Arguments

`pathway`	Gene set to plot.
`stats`	Gene-level statistics.
`gseaParam`	GSEA parameter.
`ticksSize`	width of vertical line corresponding to a gene (default: 0.2)

Value

ggplot object with the enrichment plot.

Examples

data(examplePathways)
data(exampleRanks)
## Not run: 
plotEnrichment(examplePathways[["5991130_Programmed_Cell_Death"]],
               exampleRanks)

## End(Not run)

ctlab/fgsea documentation built on April 23, 2024, 2:54 p.m.