cumsumplot: Plot cumulative sum of MCMC chain

In cttedwards/bdm: Bayesian biomass dynamics model

Plot cumulative sum of MCMC chain

Description

Plots the cumulative sum of ordered posterior samples from an MCMC chain contained within a bdm class object.

Usage

cumsumplot(object, ...)

## S3 method for class 'bdm'
cumsumplot(object, pars = c("r", "logK", "lp__"), inc_warmup = FALSE, ...)

Arguments

object	bdm class object.
...	additional arguments to the generic function
pars	character vector of model parameters to be plotted. Defaults to pars = c('r','logK','lp__').
inc_warmup	logical value indicating whether MCMC warmup should be included in the plot.

Value

Returns a ggplot object that can be displayed or assigned and manuipulated using further arguments from the ggplot2 package.

cttedwards/bdm documentation built on Oct. 11, 2022, 7:52 p.m.