getx | R Documentation |
This function can be applied to a list
or bdmData
object to provide a rough estimate of the depletion time series x.
getx(object, ...) ## S3 method for class 'bdm' getx(object, ...) ## S3 method for class 'list' getx(object, r, logK, ...)
object |
either a |
... |
additional arguments to generic function |
r |
an assumed value for the intrinsic growth rate r |
logK |
an assumed value for the carrying capacity ln(K) |
This function assumes a logistic production function and uses input values for the intrinsic growth and carrying capacity. These would usually be obtained through calls to rCalc
in the lhm package and getlogK
.
# get some data data(albio) dat <- bdmData(harvest = albio$catch, index = albio$cpue, time = rownames(albio)) # default model mdl <- bdm() # extract depletion from # bdm object getx(mdl) # extract with data mdl@data <- dat getx(mdl) # calculate depletion from # catches and assumed parameters getx(dat, logK = 6, r = exp(-1))
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