dynplot: Plot estimated dynamics from 'bdm' model fit

In cttedwards/bdm: Bayesian biomass dynamics model

Plot estimated dynamics from bdm model fit

Description

Plots the dynamics over time of the estimated biomass, depletion, harvest rate or surplus production.

Usage

dynplot(x, ...)

## S3 method for class 'bdm'
dynplot(x, ..., pars = "depletion", labels = character())

Arguments

x	bdm class object.
...	additional arguments to the generic function
pars	character vector of model parameters to be plotted. Must be one or more of 'depletion', 'biomass', 'harvest_rate' or 'surplus_production'.

Details

Depletion is measured as the biomass over the carrying capacity, harvest rate is the catch over the estimated biomass, and surplus production is the production function multiplied by the process error residual.

Value

Returns a ggplot object that can be displayed or assigned and manuipulated using further arguments from the ggplot2 package.

cttedwards/bdm documentation built on June 11, 2025, 5:17 p.m.