dev_docs/obj_arch.md

In cvraut/iBAGpkg: integrative Bayesian Analysis of the Genome

Object Architectures

this is a help doc created to organize key architecture designs

NOTE: using an object oriented approach so that we can construct new versions of iBAG like surviBAG or piBAG using inheritance & we can establish a consistent framework.

objects.R

iBAG_data - attributes: - supplied (default): - mrna (demo_mrna) - outcome (demo_outcome) - data_1+ (data_1=demo_cnv) - DEBUG (FALSE) - one_val_per_gene (TRUE) - inferred: - n_genes - n_patients - n_data - genes - patients - data_names - methods: - update_data - validate - getters - patients - genes - n_patients - n_genes - mrna - outcome - one_val_per_gene - data - data_names

iBAG_results - attributes: - supplied (default): - X (NULL) - Y (NULL) - SS (list(SST = NULL, SSE = NULL)) - beta_mean (NULL) - beta_incl_prob (NULL) - methods: - getters - X - Y - SS - beta_mean - beta_incl_prob - setters - X - Y - SS - beta_mean - beta_incl_prob

cvraut/iBAGpkg documentation built on July 26, 2022, 9:55 p.m.