layoutNetwork: Apply a layout to a network

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Apply a layout to a network

Description

Apply a layout to a network

Usage

layoutNetwork(layout.name = NULL, network = NULL, base.url = .defaultBaseUrl)

Arguments

layout.name	(character) Name of the layout (with optional parameters). If not specified, then the preferred layout set in the Cytoscape UI is applied.
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Details

Run getLayoutNames to list available layouts.

Value

None

Examples

layoutNetwork()
layoutNetwork('force-directed')
layoutNetwork('force-directed defaultSpringCoefficient=.00006 defaultSpringLength=80')

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.