setNodeBorderColorMapping | R Documentation |
Map table column values to colors to set the node border color.
setNodeBorderColorMapping(
table.column,
table.column.values = NULL,
colors = NULL,
mapping.type = "c",
default.color = NULL,
style.name = NULL,
network = NULL,
base.url = .defaultBaseUrl
)
table.column |
Name of Cytoscape table column to map values from |
table.column.values |
List of values from Cytoscape table to be used in mapping. Leave NULL to perform an automatic mapping to all column values. |
colors |
List of hex colors to map to table.column.values or a color palette function, e.g., paletteColorBrewerSet3 (without quotes). See RColorBrewer::display.brewer.all() |
mapping.type |
(char) continuous, discrete or passthrough (c,d,p); default is continuous |
default.color |
Hex color to set as default |
style.name |
Name of style; default is "default" style |
network |
(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape. |
base.url |
(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3. |
None
setNodeBorderColorMapping('score', c(0,5), c('#FFFFFF','#FF7755'))
setNodeBorderColorMapping('score', colors=paletteColorBrewerRdBu)
setNodeBorderColorMapping('score', colors=paletteColorBrewerSet3, mapping.type='d')
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