setNodeSizeMapping: Set Node Size Mapping

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Set Node Size Mapping

Description

Map table column values to node font sizes.

Usage

setNodeSizeMapping(
  table.column,
  table.column.values = NULL,
  sizes = NULL,
  mapping.type = "c",
  default.size = NULL,
  style.name = NULL,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table.column	Name of Cytoscape table column to map values from
table.column.values	List of values from Cytoscape table to be used in mapping. Leave NULL to perform an automatic mapping to all column values.
sizes	List of sizes to map to table.column.values. A range of 10 to 100 is used by default for automatic mapping.
mapping.type	(char) continuous, discrete or passthrough (c,d,p); default is continuous
default.size	Size value to set as default
style.name	Name of style; default is "default" style
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Details

Using this function will lock node width and height to use a singular "size" value.

Value

None

Examples

setNodeSizeMapping('score')
setNodeSizeMapping('score', sizes=c(30,80))
setNodeSizeMapping('score', c(0,30), c(35,55))

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.