Man pages for cytoscape/r2cytoscape
Functions for Cytoscape Automation
| applyLayout | Apply a layout to the current network |
| applyStyle | Apply a style to the current network |
| bundleEdges | Bundle edges |
| checkCytoscapeVersion | Check the version of Cytoscape |
| clearSelection | Deselect all nodes and edges |
| command2query | Command string to CyREST query URL |
| commandHelp | Command Help |
| commandRun | Command Run |
| createIgraphFromNetwork | Create an igraph network from a Cytoscape network |
| createNetwork | Create a network from R objects |
| createNetworkFromIgraph | Create a Cytoscape network from an igraph network |
| createStyle | Create a style from components |
| createSubnetwork | Create subnetwork from existing network |
| exportImage | Exports the current network view as an image |
| exportNetwork | Exports the current network as a data file |
| exportStyle | Exports the current visual style as a data file |
| getNetworkName | Get the name of a network |
| getNetworkSuid | Get the SUID of a network |
| getNetworkViewId | Get the network view suid |
| getNodeTable | Get node table |
| getNodeViewTable | Get node view table |
| getTableColumns | Get table column values |
| listNetworks | List the names of all networks in current session |
| listStyles | List the names of all visual styles |
| listTableColumns | List names of all columns in a table |
| listVisualProperties | List the names and parameters of available Visual Properties |
| loadTableData | Loads data into Cytoscape tables keyed by row |
| mapVisualProperty | Creates a mapping between an attribute and a visual property |
| moveSelectedNodes | Move selected nodes |
| openCySwagger | Open CySwagger docs in browser |
| renameNetwork | Rename network |
| saveSession | Saves the current Cytoscape session |
| selectFirstNeighbors | Select first neighbor nodes |
| selectNodes | Select nodes |
| setCurrentNetwork | Set current network |
| updateStyleDefaults | Updates the default values of visual properties in a style |
| updateStyleDependencies | Updates the values of dependencies in a style |
| updateStyleMapping | Updates a visual property mapping in a style |
