pcd_pred: Predicted PCD with species pool

In daijiang/dli55: Functions collected/wrote by Daijiang Li

Description

expected PCD from one or two communities (depends on the species pool)

Usage

pcd_pred(comm_old, comm_new = NULL, tree, reps = 10^3, cpp = TRUE)

Arguments

comm_old	a site by species dataframe or matrix, with sites as rows and species as columns.
comm_new	an optional second site by species data frame. It should have the same number of rows as comm_old.
tree	the phylogeny for communities.
reps	number of random draws, default is 1000 times.
cpp	whether to use loops written with c++, default is TRUE

Value

a list with species richness of the pool, expected PSV, PSV of the pool, and unique number of species richness across sites.

daijiang/dli55 documentation built on Jan. 9, 2020, 3:30 p.m.