Description Usage Arguments Value

Calculate Phylogenetic beta diversity and its partition, adapted from betapart::phylo.belt.xx(). Since the pairwise and multisie version share the same core computation process, it makes more sense to return both. Then we can choose which one to use.

1 | ```
phylo_betapart(comm = dat_1, tree)
``` |

`comm` |
a site by species data frame, site names as row names |

`tree` |
a phylogeny of class "phylo" |

a list of four: pairwise beta of jaccard and sorense; and multisite beta of jaccard and sorensen. Pairwise beta has three distance matrix. For jaccard, phylo.beta.jtu is the turnover-fraction of Jaccard, phylo.beta.jne is the nestedness-fraction. For sorensen, phylo.beta.sim is the turnover part measured as Simpson derived pairwise dissimilarity, phylo.beta.sne is the nestedness-fraction. Similarly for the multisite version.

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