pd2: Faith's PD
In daijiang/dli55: Functions collected/wrote by Daijiang Li
Description
Usage
Arguments
Value
Description
Calculate faith's pd, this is a wrapper of phylocomr::ph_pd and picante::pd
Usage
1
Arguments
comm
a site by species data frame, site names as row names, only works for presence/absence data
tree
a phylogeny of class "phylo"
include.root
whether include root in picante::pd; phylocomr::ph_pd always include root
comm_long
long format of comm, 3-columns: site, freq, sp; optional.
Value
a data frame of PD for each site
daijiang/dli55 documentation built on Jan. 9, 2020, 3:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Calculate faith's pd, this is a wrapper of phylocomr::ph_pd and picante::pd
Usage
1 |
Arguments
comm |
a site by species data frame, site names as row names, only works for presence/absence data |
tree |
a phylogeny of class "phylo" |
include.root |
whether include root in picante::pd; phylocomr::ph_pd always include root |
comm_long |
long format of comm, 3-columns: site, freq, sp; optional. |
Value
a data frame of PD for each site
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.