Description Usage Arguments Value
Calculate faith's pd, this is a wrapper of phylocomr::ph_pd and picante::pd
1 |
comm |
a site by species data frame, site names as row names, only works for presence/absence data |
tree |
a phylogeny of class "phylo" |
include.root |
whether include root in picante::pd; phylocomr::ph_pd always include root |
comm_long |
long format of comm, 3-columns: site, freq, sp; optional. |
a data frame of PD for each site
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