unifrac2: unifrac
In daijiang/dli55: Functions collected/wrote by Daijiang Li
Description
Usage
Arguments
Value
Description
calculate unifrac of pairwise site. This is based on picante::unifrac, but with phylocomr::ph_pd to calculate pd, which can improve speed dramatically.
Usage
1
Arguments
comm
a site by sp data frame, row names are site names
tree
a phylogeny with 'phylo' class
comm_long
a long format of comm, can be missing
Value
a site by site distance object
daijiang/dli55 documentation built on Jan. 9, 2020, 3:30 p.m.
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Description Usage Arguments Value
Description
calculate unifrac of pairwise site. This is based on picante::unifrac, but with phylocomr::ph_pd to calculate pd, which can improve speed dramatically.
Usage
1 |
Arguments
comm |
a site by sp data frame, row names are site names |
tree |
a phylogeny with 'phylo' class |
comm_long |
a long format of comm, can be missing |
Value
a site by site distance object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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