API for daijiang/phyr
Phylogenetic Analysis with R

Global functions
\%nin\% Man page
align_comm_V Man page Source code
binaryPGLMM Man page Source code
binaryPGLMM.sim Man page Man page Source code
binpglmm_inter_while Source code
binpglmm_inter_while_cpp Source code
binpglmm_inter_while_cpp2 Source code
boot_ci Man page Source code
boot_ci.cor_phylo Man page Source code
call_arg Source code
check_phy Source code
comm_a Man page
comm_b Man page
communityPGLMM Man page Source code
communityPGLMM.binary.LRT Man page Source code
communityPGLMM.matrix.structure Man page Source code
communityPGLMM.plot.re Man page Source code
communityPGLMM.predicted.values Man page Source code
communityPGLMM.show.re Man page
cor_phylo Man page Source code
cor_phylo_ Source code
cor_phylo_LL Source code
cov2cor_cpp Source code
cp_get_row_names Source code
cp_get_species Source code
envi Man page
extract_covariates Source code
extract_meas_errors Source code
extract_traits Source code
fitted.communityPGLMM Man page Source code
fixef Man page Source code
get_design_matrix Man page Source code
match_comm_tree Man page Source code
onLoad Source code
pcd Man page Source code
pcd2_loop Source code
pcd_pred Man page Source code
pglmm Man page
pglmm.reml Source code
pglmm_binary_internal_cpp Source code
pglmm_gaussian_LL_calc Source code
pglmm_gaussian_LL_calc_cpp Source code
pglmm_gaussian_LL_cpp Source code
pglmm_gaussian_internal_cpp Source code
pglmm_gaussian_predict Source code
pglmm_reml_cpp Source code
phylotree Man page
plmm.binary.LL Source code
plmm.binary.V Source code
plmm.binary.iV.logdetV Source code
plmm_binary_LL_cpp Source code
plmm_binary_V Source code
plmm_binary_iV_logdetV_cpp Source code
plot.communityPGLMM Man page Source code
predict_cpp Source code
prep_dat_pglmm Man page Source code
print.binaryPGLMM Man page Man page Source code
print.communityPGLMM Man page Source code
print.cor_phylo Man page Source code
process_cov_me_list Source code
psc Man page Source code
psd Man page Source code
pse Man page Source code
pse_cpp Source code
psr Man page Source code
psv Man page Source code
psv.spp Man page Source code
psv_cpp Source code
residuals.communityPGLMM Man page Source code
rm_site_noobs Man page Source code
rm_sp_noobs Man page Source code
set_seed Source code
sexp_type Source code
sim_cor_phylo_traits Source code
summary.communityPGLMM Man page Source code
traits Man page
vcv2 Man page Source code
vcv_loop Source code
which2 Source code
daijiang/phyr documentation built on Sept. 2, 2018, 11:26 p.m.