match_comm_tree: Match phylogeny with community data
In daijiang/phyr: Model Based Phylogenetic Analysis
match_comm_tree R Documentation
Match phylogeny with community data
Description
This function will remove species from community data that are not in the phylogeny.
It will also remove tips from the phylogeny that are not in the community data.
Usage
match_comm_tree(comm, tree, comm_2 = NULL)
Arguments
comm
A site by species data frame, with site names as row names.
tree
A phylogeny with "phylo" as class.
comm_2
Another optional site by species data frame, if presented, both community data and the phylogeny
will have the same set of species. This can be useful for PCD with custom species pool.
Value
A list of the community data and the phylogeny.
daijiang/phyr documentation built on Feb. 25, 2024, 3:01 a.m.
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| match_comm_tree | R Documentation |
Match phylogeny with community data
Description
This function will remove species from community data that are not in the phylogeny. It will also remove tips from the phylogeny that are not in the community data.
Usage
match_comm_tree(comm, tree, comm_2 = NULL)
Arguments
comm |
A site by species data frame, with site names as row names. |
tree |
A phylogeny with "phylo" as class. |
comm_2 |
Another optional site by species data frame, if presented, both community data and the phylogeny will have the same set of species. This can be useful for PCD with custom species pool. |
Value
A list of the community data and the phylogeny.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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