pglmm_profile_LRT | R Documentation |
pglmm_profile_LRT
tests statistical significance of the
phylogenetic random effect using profile likelihoods when bayes = F.
The resulting p-values are conditional on the fixed
estimates of the other parameters, in contrast to a standard
likelihood ratio test.
pglmm_profile_LRT(x, re.number = 0, cpp = TRUE)
communityPGLMM.profile.LRT(x, re.number = 0, cpp = TRUE)
x |
A fitted model with class communityPGLMM with |
re.number |
Which random term to test? Can be a vector with length >1. |
cpp |
Whether to use C++ function for optim. Default is TRUE. Ignored if |
A list of likelihood, df, and p-value.
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