pcd | R Documentation |
Calculate pairwise site PCD, users can specify expected values from pcd_pred()
.
pcd(comm, tree, expectation = NULL, cpp = TRUE, verbose = TRUE, ...)
comm |
A site by species data frame or matrix, sites as rows. |
tree |
A phylogeny for species. |
expectation |
nsp_pool, psv_bar, psv_pool, and nsr calculated from |
cpp |
Whether to use loops written with c++, default is TRUE. |
verbose |
Do you want to see the progress? |
... |
Other arguments. |
A list of a variety of pairwise dissimilarities.
Ives, A. R., & Helmus, M. R. 2010. Phylogenetic metrics of community similarity. The American Naturalist, 176(5), E128-E142.
x1 = pcd_pred(comm_1 = comm_a, comm_2 = comm_b, tree = phylotree, reps = 100)
pcd(comm = comm_a, tree = phylotree, expectation = x1)
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