genomeplot: plot a copy number profile
In dakl/clinseqr: Function used to analyze data in the clinseq project
Description
Usage
Arguments
Value
Examples
Description
plot a copy number profile
Usage
1
genomeplot(segments, chrsizes, chrs_to_use)
Arguments
segments
Data frame with segments from qdnaseq. Must include column chr, start, end and segmented, and *prob.
chrsizes
Data frame with chromosome sizes.
chr_to_use
Vector of chromosome names to use. If not used, intersection of segments and chrsizes will be used.
Value
A ggplot object
Examples
1
# genomeplot(segments, chrsizes)
dakl/clinseqr documentation built on May 14, 2019, 3:30 p.m.
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Description Usage Arguments Value Examples
Description
plot a copy number profile
Usage
1 | genomeplot(segments, chrsizes, chrs_to_use)
|
Arguments
segments |
Data frame with segments from qdnaseq. Must include column chr, start, end and segmented, and *prob. |
chrsizes |
Data frame with chromosome sizes. |
chr_to_use |
Vector of chromosome names to use. If not used, intersection of segments and chrsizes will be used. |
Value
A ggplot object
Examples
1 | # genomeplot(segments, chrsizes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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