Description Usage Arguments Value Examples
plot a copy number profile
1 | genomeplot(segments, chrsizes, chrs_to_use)
|
segments |
Data frame with segments from qdnaseq. Must include column chr, start, end and segmented, and *prob. |
chrsizes |
Data frame with chromosome sizes. |
chr_to_use |
Vector of chromosome names to use. If not used, intersection of segments and chrsizes will be used. |
A ggplot object
1 | # genomeplot(segments, chrsizes)
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