getIsoformExprMatrix: Get isoform expression from sailfish output

Description Usage Arguments Value Examples

Description

Get isoform expression from sailfish output

Usage

1
getIsoformExprMatrix(reports, columnToUse = "EstimatedNumKmers")

Arguments

reports

data frame with reports

columnToUse

Name of the column in sailfish output to use

Value

A data frame with isoform quant from sailfish base on columnToUse

Examples

1
2
#dat <- getIsoformExprMatrix(reports)
#dat <- getIsoformExprMatrix(reports, columnToUse="TPM")

dakl/clinseqr documentation built on May 14, 2019, 3:30 p.m.