activity_diag: Visual diagnostic for activity data using MAVEn with baseline

In dapperstats/MAVEn: A Worflow Pipeline for Processing MAVEn Datasets

Description

Visual diagnostic for activity data using MAVEn with baseline

Usage

activity_diag(
  maven_raw = "maven_raw",
  metabolism_summary_cycle = "metabolism_summary_cycle",
  activity_summary_cycle = "activity_summary_cycle",
  interval = "",
  outdir = NULL,
  maven_experiment = "",
  out_filename = "ActivityDiagnostic",
  out_filetype = ".png"
)

Arguments

maven_raw	Complete MAVEn dataset including baseline readings.
metabolism_summary_cycle	Dataframe calculated by summarize_metabolism with the "by_cycle" type indicated.
activity_summary_cycle	Dataframe calculated by summarize_activity with the "by_cycle" type indicated.
interval	Time interval for analysis.
outdir	Folder where figure should be stored.
maven_experiment	Experiment name. Applied to both figures and files.
out_filename	Figure name.
out_filetype	Figure file type.

Value

Plot with raw MAVEn data, calculated median metabolism, and animal activity. Coloured boxes represent the calculated activity state based on activity threshold.

dapperstats/MAVEn documentation built on Jan. 22, 2021, 3:39 p.m.