extract_activity: Extract animal activity data from MAVEn without baseline

In dapperstats/MAVEn: A Worflow Pipeline for Processing MAVEn Datasets

Description

extract_activity extracts animal activity data from the cycle integrated MAVEn dataset and calculated animal metabolism. It applies a measurement adjustment to the time series for visualization with activity_trend.

Usage

extract_activity(
  maven_cycle,
  metabolism_summary_cycle,
  interval = "",
  activity_baseline = ""
)

Arguments

maven_cycle	MAVEn dataset with cycles assigned. Must apply assign_cyclenumbers to MAVEn dataset without baseline data.
metabolism_summary_cycle	Summary dataset created by summarize_metabolism.
interval	Measurement interval for activity evaluation. Must be in seconds. Recommend value less than 60 to stay within the instrument metabolism measurement.
activity_baseline	Baseline value for activity.

Value

Extracted animal activity dataset with median time and activity start/end times.

dapperstats/MAVEn documentation built on Jan. 22, 2021, 3:39 p.m.