plot_maven_overview: Plot MAVEn experimental overview data.

In dapperstats/MAVEn: A Worflow Pipeline for Processing MAVEn Datasets

Description

plot_maven_overview generates four plots to track the instrumental timecourse and requires the full MAVEn dataset (readings + baseline) generated by setting 'baseline' = T in read_maven. The graphic can be automatically saved.

Usage

plot_maven_overview(
  maven_raw,
  maven_experiment = "",
  outdir = NULL,
  out_filename = "ExpOverview",
  out_filetype = ".png"
)

Arguments

maven_raw	Complete MAVEn dataset including baseline readings.
maven_experiment	Experiment name. Applied to both figures and files.
outdir	Folder where figure should be stored.
out_filename	Figure name.
out_filetype	Figure file type.

Value

Four panel plot of experimental overview for quick diagnostics. Includes, Chamber readings, Thermocouple 1 (TC1), Flow rate in the sample/animal chamber (ml/min) (FRC_mlmin), and carbon dioxide (CO[2], ppm).

dapperstats/MAVEn documentation built on Jan. 22, 2021, 3:39 p.m.