API for databio/COCOA
Coordinate Covariation Analysis
| Global functions | |
|---|---|
| .formatResults | Source code |
| .makeSymmetric | Source code |
| BSBinAggregate | Source code |
| BSdtToGRanges | Source code |
| COCOA | Man page |
| aggregateSignal | Man page Source code |
| aggregateSignalGRList | Man page Source code |
| atf3_chr1 | Man page |
| averagePerRegion | Source code |
| brcaATACCoord1 | Man page |
| brcaATACData1 | Man page |
| brcaMCoord1 | Man page |
| brcaMetadata | Man page |
| brcaMethylData1 | Man page |
| brcaPCScores | Man page |
| brcaPCScores657 | Man page |
| buildJ | Source code |
| checkConvertInputClasses | Source code |
| cleanws | Source code |
| convertToFromNullDist | Man page Source code |
| createCorFeatureMat | Source code |
| detectSignalCoordType | Source code |
| dtToGr | Source code |
| dtToGrInternal | Source code |
| esr1_chr1 | Man page |
| fitGammaNullDist | Source code |
| gata3_chr1 | Man page |
| getGammaPVal | Man page Source code |
| getMetaRegionProfile | Man page Source code |
| getPermStat | Man page Source code |
| getPermStatSingle | Source code |
| getScoringMethods | Source code |
| getTopRegions | Man page |
| grToDt | Source code |
| lapplyAlias | Source code |
| makeSymmetric | Source code |
| nrf1_chr1 | Man page |
| pGammaList | Source code |
| permListToOneNullDist | Source code |
| plotAnnoScoreDist | Man page Source code |
| regionQuantileByTargetVar | Man page Source code |
| rsRankingIndex | Man page |
| rsScoreHeatmap | Man page Source code |
| rsScores | Man page |
| runCOCOA | Man page Source code |
| runCOCOAPerm | Man page Source code |
| setLapplyAlias | Source code |
| signalAlongAxis | Man page Source code |
| weightedAvePerRegion | Source code |
