brcaPCScores657: A data.frame with principal component scores for PCs 1-4 for...
In databio/COCOA: Coordinate Covariation Analysis
brcaPCScores657 R Documentation
A data.frame with principal component scores for
PCs 1-4 for 657 breast cancer patients as well
as a column with estrogen receptor status.
Description
This object contains PC scores for 657 patients
for PCs 1-4. Columns are PCs as well
as a column with estrogen receptor status. Rows are patients,
with TCGA patient identifiers as row names. Patients
were selected from all BRCA patients in TCGA based on having complete
metadata information for estrogen receptor status
and progesterone receptor status as well as
having 450k microarray data.
PCA was done on the Illumina 450k
DNA methlyation
microarray data (TCGA-BRCA, https://portal.gdc.cancer.gov/),
hg38 genome.
Usage
data(brcaPCScores657)
Format
A data.frame object
databio/COCOA documentation built on Sept. 1, 2023, 5:50 p.m.
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| brcaPCScores657 | R Documentation |
A data.frame with principal component scores for PCs 1-4 for 657 breast cancer patients as well as a column with estrogen receptor status.
Description
This object contains PC scores for 657 patients for PCs 1-4. Columns are PCs as well as a column with estrogen receptor status. Rows are patients, with TCGA patient identifiers as row names. Patients were selected from all BRCA patients in TCGA based on having complete metadata information for estrogen receptor status and progesterone receptor status as well as having 450k microarray data. PCA was done on the Illumina 450k DNA methlyation microarray data (TCGA-BRCA, https://portal.gdc.cancer.gov/), hg38 genome.
Usage
data(brcaPCScores657)
Format
A data.frame object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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