Files in databio/COCOA
Coordinate Covariation Analysis

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/COCOA.R R/data.R R/permutation.R R/utility.R R/visualization.R README.md
_pkgdown.yaml
data/atf3_chr1.RData
data/brcaATACCoord1.RData
data/brcaATACData1.RData
data/brcaMCoord1.RData
data/brcaMetadata.RData
data/brcaMethylData1.RData
data/brcaPCScores.RData
data/brcaPCScores657.RData
data/esr1_chr1.RData
data/gata3_chr1.RData
data/nrf1_chr1.RData
data/rsScores.RData
inst/CITATION
license.txt
man-roxygen/GRList.R man-roxygen/absVal.R man-roxygen/checkInput.R man-roxygen/genomicSignal.R man-roxygen/olList.R man-roxygen/pOlapList.R man-roxygen/regionSet.R man-roxygen/returnCovInfo.R man-roxygen/rsOL.R man-roxygen/rsScores.R man-roxygen/scoringMetric.R man-roxygen/signal.R man-roxygen/signalCol.R man-roxygen/signalCoord.R man-roxygen/signalCoordType.R man-roxygen/targetVar.R man-roxygen/variationMetric.R man-roxygen/verbose.R man/COCOA.Rd man/aggregateSignal.Rd man/aggregateSignalGRList.Rd man/atf3_chr1.Rd man/brcaATACCoord1.Rd man/brcaATACData1.Rd man/brcaMCoord1.Rd man/brcaMetadata.Rd man/brcaMethylData1.Rd man/brcaPCScores.Rd man/brcaPCScores657.Rd man/convertToFromNullDist.Rd man/esr1_chr1.Rd man/gata3_chr1.Rd man/getGammaPVal.Rd man/getMetaRegionProfile.Rd man/getPermStat.Rd man/getTopRegions.Rd man/nrf1_chr1.Rd man/plotAnnoScoreDist.Rd man/regionQuantileByTargetVar.Rd man/rsRankingIndex.Rd man/rsScoreHeatmap.Rd man/rsScores.Rd man/runCOCOA.Rd man/runCOCOAPerm.Rd man/signalAlongAxis.Rd tests/testthat.R tests/testthat/test_all.R vignettes/IntroToCOCOA.Rmd
databio/COCOA documentation built on Sept. 1, 2023, 5:50 p.m.