brcaATACCoord1: A GRanges object with coordinates for select BRCA ATAC-seq...
In databio/COCOA: Coordinate Covariation Analysis
brcaATACCoord1 R Documentation
A GRanges object with coordinates for select
BRCA ATAC-seq peak regions from chr1.
Description
Corresponds to
the rows of brcaATACData1.
The ATAC-seq data is from breast cancer
patients from The Cancer Genome Atlas
(TCGA-BRCA, Corces et. al, 2018, doi: 10.1126/science.aav1898,
https://atacseq.xenahubs.net/download/brca/brca_peak_Log2Counts_dedup).
Coordinates correspond to the hg38 genome version.
Only select regions on chr1 are included to keep
the example data small.
Usage
data(brcaATACCoord1)
Format
A GRanges object
databio/COCOA documentation built on Sept. 1, 2023, 5:50 p.m.
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| brcaATACCoord1 | R Documentation |
A GRanges object with coordinates for select BRCA ATAC-seq peak regions from chr1.
Description
Corresponds to the rows of brcaATACData1. The ATAC-seq data is from breast cancer patients from The Cancer Genome Atlas (TCGA-BRCA, Corces et. al, 2018, doi: 10.1126/science.aav1898, https://atacseq.xenahubs.net/download/brca/brca_peak_Log2Counts_dedup). Coordinates correspond to the hg38 genome version. Only select regions on chr1 are included to keep the example data small.
Usage
data(brcaATACCoord1)
Format
A GRanges object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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