datapplab/SBGNview: "SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"
SBGNview is a tool set for pathway based data visalization, integration and analysis. SBGNview is similar and complementary to the widely used Pathview, with the following key features: 1. Pathway definition by the widely adopted Systems Biology Graphical Notation (SBGN); 2. Supports multiple major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP) and user defined pathways; 3. Covers 5,200 reference pathways and over 3,000 species by default; 4. Extensive graphics controls, including glyph and edge attributes, graph layout and sub-pathway highlight; 5. SBGN pathway data manipulation, processing, extraction and analysis.
Getting started
Browse package contents
Package details |
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| Author | Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo |
| Bioconductor views | DifferentialExpression GeneExpression GeneSetEnrichment GeneTarget Genetics GraphAndNetwork Metabolomics Microarray Pathways Proteomics RNASeq Sequencing SystemsBiology Visualization |
| Maintainer | Weijun Luo <luo_weijun@yahoo.com> |
| License | AGPL-3 |
| Version | 1.5.1 |
| URL | https://github.com/datapplab/SBGNview |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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