Files in davidcoffey/LymphoSeq
Analyze high-throughput sequencing of T and B cell receptors
.Rbuildignore
.gitignore
DESCRIPTION
LymphoSeq.Rproj
NAMESPACE
R/alignSeq.R
R/bhattacharyyaCoefficient.R
R/bhattacharyyaMatrix.R
R/chordDiagramVDJ.R
R/clonalRelatedness.R
R/clonality.R
R/cloneTrack.R
R/commonSeqs.R
R/commonSeqsBar.R
R/commonSeqsPlot.R
R/commonSeqsVenn.R
R/differentialAbundance.R
R/exportFasta.R
R/geneFreq.R
R/lorenzCurve.R
R/mergeFiles.R
R/pairwisePlot.R
R/phyloTree.R
R/productive.R
R/productiveSeq.R
R/readImmunoSeq.R
R/removeSeq.R
R/searchPublished.R
R/searchSeq.R
R/seqMatrix.R
R/similarityMatrix.R
R/similarityScore.R
R/topFreq.R
R/topSeqs.R
R/topSeqsPlot.R
R/uniqueSeqs.R
README.md
inst/NEWS
inst/extdata/IGH_metadata.csv
inst/extdata/IGH_sequencing/IGH_MVQ108911A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ194745A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ81231A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ89037A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ90143A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ92552A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ93505A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ93631A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ94865A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ95413A_BL.tsv
inst/extdata/TCRB_metadata.csv
inst/extdata/TCRB_sequencing/TRB_CD4_949.tsv
inst/extdata/TCRB_sequencing/TRB_CD8_949.tsv
inst/extdata/TCRB_sequencing/TRB_CD8_CMV_369.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_0.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_1320.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_1496.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_32.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_369.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_83.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_949.tsv
man/alignSeq.Rd
man/bhattacharyyaCoefficient.Rd
man/bhattacharyyaMatrix.Rd
man/chordDiagramVDJ.Rd
man/clonalRelatedness.Rd
man/clonality.Rd
man/cloneTrack.Rd
man/commonSeqs.Rd
man/commonSeqsBar.Rd
man/commonSeqsPlot.Rd
man/commonSeqsVenn.Rd
man/differentialAbundance.Rd
man/exportFasta.Rd
man/geneFreq.Rd
man/lorenzCurve.Rd
man/mergeFiles.Rd
man/pairwisePlot.Rd
man/phyloTree.Rd
man/productive.Rd
man/productiveSeq.Rd
man/readImmunoSeq.Rd
man/removeSeq.Rd
man/searchPublished.Rd
man/searchSeq.Rd
man/seqMatrix.Rd
man/similarityMatrix.Rd
man/similarityScore.Rd
man/topFreq.Rd
man/topSeqs.Rd
man/topSeqsPlot.Rd
man/uniqueSeqs.Rd
vignettes/LymphoSeq.Rmd
