topSeqs: Top sequences
In davidcoffey/LymphoSeq: Analyze high-throughput sequencing of T and B cell receptors
Description
Usage
Arguments
Value
See Also
Examples
Description
Creates a data frame of a selected number of top productive sequences
from a list of data frames.
Usage
1
topSeqs(productive.seqs, top = 1)
Arguments
productive.seqs
A list data frames of productive sequences generated
by the LymphoSeq function productiveSeq. "frequencyCount" and "aminoAcid"
are a required columns.
top
The number of top productive sequences in each data frame to subset
by their frequencies.
Value
Returns a data frame of a selected number of top productive sequences
from a list of data frames.
See Also
Examples
1
2
3
4
5
6
7
file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")
file.list <- readImmunoSeq(path = file.path)
productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")
top.seqs <- topSeqs(productive.seqs = productive.aa, top = 1)
davidcoffey/LymphoSeq documentation built on Dec. 31, 2019, 9:52 p.m.
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Description Usage Arguments Value See Also Examples
Description
Creates a data frame of a selected number of top productive sequences from a list of data frames.
Usage
1 | topSeqs(productive.seqs, top = 1)
|
Arguments
productive.seqs |
A list data frames of productive sequences generated by the LymphoSeq function productiveSeq. "frequencyCount" and "aminoAcid" are a required columns. |
top |
The number of top productive sequences in each data frame to subset by their frequencies. |
Value
Returns a data frame of a selected number of top productive sequences from a list of data frames.
See Also
Examples
1 2 3 4 5 6 7 | file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")
file.list <- readImmunoSeq(path = file.path)
productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")
top.seqs <- topSeqs(productive.seqs = productive.aa, top = 1)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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