Files in davidcoffey/LymphoSeq
Analyze high-throughput sequencing of T and B cell receptors

.Rbuildignore
.gitignore
DESCRIPTION
LymphoSeq.Rproj
NAMESPACE
R/alignSeq.R R/bhattacharyyaCoefficient.R R/bhattacharyyaMatrix.R R/chordDiagramVDJ.R R/clonalRelatedness.R R/clonality.R R/cloneTrack.R R/commonSeqs.R R/commonSeqsBar.R R/commonSeqsPlot.R R/commonSeqsVenn.R R/differentialAbundance.R R/exportFasta.R R/geneFreq.R R/lorenzCurve.R R/mergeFiles.R R/pairwisePlot.R R/phyloTree.R R/productive.R R/productiveSeq.R R/readImmunoSeq.R R/removeSeq.R R/searchPublished.R R/searchSeq.R R/seqMatrix.R R/similarityMatrix.R R/similarityScore.R R/topFreq.R R/topSeqs.R R/topSeqsPlot.R R/uniqueSeqs.R README.md
inst/NEWS
inst/extdata/IGH_metadata.csv
inst/extdata/IGH_sequencing/IGH_MVQ108911A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ194745A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ81231A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ89037A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ90143A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ92552A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ93505A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ93631A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ94865A_BL.tsv
inst/extdata/IGH_sequencing/IGH_MVQ95413A_BL.tsv
inst/extdata/TCRB_metadata.csv
inst/extdata/TCRB_sequencing/TRB_CD4_949.tsv
inst/extdata/TCRB_sequencing/TRB_CD8_949.tsv
inst/extdata/TCRB_sequencing/TRB_CD8_CMV_369.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_0.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_1320.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_1496.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_32.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_369.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_83.tsv
inst/extdata/TCRB_sequencing/TRB_Unsorted_949.tsv
man/alignSeq.Rd man/bhattacharyyaCoefficient.Rd man/bhattacharyyaMatrix.Rd man/chordDiagramVDJ.Rd man/clonalRelatedness.Rd man/clonality.Rd man/cloneTrack.Rd man/commonSeqs.Rd man/commonSeqsBar.Rd man/commonSeqsPlot.Rd man/commonSeqsVenn.Rd man/differentialAbundance.Rd man/exportFasta.Rd man/geneFreq.Rd man/lorenzCurve.Rd man/mergeFiles.Rd man/pairwisePlot.Rd man/phyloTree.Rd man/productive.Rd man/productiveSeq.Rd man/readImmunoSeq.Rd man/removeSeq.Rd man/searchPublished.Rd man/searchSeq.Rd man/seqMatrix.Rd man/similarityMatrix.Rd man/similarityScore.Rd man/topFreq.Rd man/topSeqs.Rd man/topSeqsPlot.Rd man/uniqueSeqs.Rd vignettes/LymphoSeq.Rmd
davidcoffey/LymphoSeq documentation built on Dec. 31, 2019, 9:52 p.m.