uniqueSeqs: Unique sequences
In davidcoffey/LymphoSeq: Analyze high-throughput sequencing of T and B cell receptors
Description
Usage
Arguments
Value
Examples
Description
Aggregates all productive sequences within a list of data frames by count.
Usage
1
uniqueSeqs(productive.aa)
Arguments
productive.aa
A list data frames of of productive amino acid sequences
imported using the function LymphoSeq function productiveSeq where the
aggregate parameter was set to "aminoAcid".
Value
A data frame of unique amino acid sequences from the list of
data frames aggregated by count.
Examples
1
2
3
4
5
6
7
file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")
file.list <- readImmunoSeq(path = file.path)
productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")
unique.seqs <- uniqueSeqs(productive.aa = productive.aa)
davidcoffey/LymphoSeq documentation built on Dec. 31, 2019, 9:52 p.m.
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Description Usage Arguments Value Examples
Description
Aggregates all productive sequences within a list of data frames by count.
Usage
1 | uniqueSeqs(productive.aa)
|
Arguments
productive.aa |
A list data frames of of productive amino acid sequences imported using the function LymphoSeq function productiveSeq where the aggregate parameter was set to "aminoAcid". |
Value
A data frame of unique amino acid sequences from the list of data frames aggregated by count.
Examples
1 2 3 4 5 6 7 | file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")
file.list <- readImmunoSeq(path = file.path)
productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")
unique.seqs <- uniqueSeqs(productive.aa = productive.aa)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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