innovateGene: Greedily add new gene to regulatory function.

In davidkwca/inferTPBN: Infer Threshold PBNs from Timeseries Data.

Description

Find the best regulatory input given the current regulatory function.

Usage

innovateGene(ts.multi, net, g, partial = FALSE, verbal = TRUE)

Arguments

ts.multi	A list of timeseries.
net	A network.
g	A gene.
partial	Whether only the most recently added gene should have its parameter optimized. Defaults to FALSE.
verbal	Whether messages to indicate progress should be shown. Defaults to TRUE.

Details

Try to add regulators to the "most recent" regulatory set. Stop only when there is no improvement any longer. The choice of the gene to add is done greedily.

Value

A network.

See Also

innovateGeneUntilSaturated innovateGeneFunction

davidkwca/inferTPBN documentation built on May 9, 2019, 12:53 p.m.