Description Usage Arguments Value See Also Examples
Creates a network with the desired characteristics and simulates a list of timeseries from it which can be used to test the network inference algorithm against.
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n |
Size of the network. |
k |
The number of inputs per regulatory function for each gene, if homogeneous topology is used. |
p |
The probability of a perturbation. |
inputProbabilities |
Probabilities for creating one, two, three, ... regulatory functions for a gene. |
topology |
The topology to be used. Can be "homogeneous" or "scale_free". |
gamma |
The exponent for the power law if topology = "scale_free". |
num.timepoints |
The number of time points per timeseries generated. |
num.experiments |
The number of timeseries to generate. |
seed |
The random seed to use. |
A list containing the generated network and a list of timeseries simulated from it.
transformNetwork
simulateNetwork
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