optimizeC: Optimize probabilities for regulatory functions to be used.

In davidkwca/inferTPBN: Infer Threshold PBNs from Timeseries Data.

Description

Find best probabilities. Prune those with small values.

Usage

optimizeC(ts.multi, net, g, prune = TRUE, thresh = 0.1)

Arguments

ts.multi	A list of timeseries.
net	A network.
g	A gene.
prune	Whether or not to prune regulatory functions with low probabilities assigned to them.
thresh	The threshold below which to prune functions if prune is TRUE.

Details

Using bestC, this finds the best probabilities. Afterwards, it prunes all functions whose probabilities is below a user-defined threshold.

Value

A network whose probabilities have been optimized.

See Also

bestC

davidkwca/inferTPBN documentation built on May 9, 2019, 12:53 p.m.