innovateGeneFunction: Add regulatory function to a gene.

In davidkwca/inferTPBN: Infer Threshold PBNs from Timeseries Data.

Description

Add a new regulatory function complete with inputs.

Usage

innovateGeneFunction(ts.multi, net, g, partial = FALSE, verbal = TRUE,
  thresh = 0.1, k.max = 3, new.max = 1)

Arguments

ts.multi	A list of timeseries.
net	A network.
g	A gene.
partial	Whether optimization of threshold parameter a is done only for latest gene. Defaults to FALSE.
verbal	Whether progress messages should be displayed.
thresh	By how much the improvement has to be to count. This has to be greater than zero as otherwise new genes will always be added to the brim.
k.max	How many regulatory genes to allow maximally. To avoid excessive computation, this should be set to a small constant. Defaults to 3.
new.max	An integer indicating how many new regulatory sets can be generated at once.

Details

This starts by taking some of the probability off the previous inferred function and tries to find optimal genes and probabilities for the new function.

Value

A network.

See Also

innovateGene innovateGeneUntilSaturated

davidkwca/inferTPBN documentation built on May 9, 2019, 12:53 p.m.