Description Usage Arguments Value Author(s)
View source: R/index.genotype.R
Index genotype file. The file must be tab-separated and ordered by chr, start, end position. Moreover, the first four columns must contain 'chr', 'start', 'end' and 'snpId' information. Then each additional column is named using a sample ID and represents its genotype. The genotype is coded as follow: 0 for ref/ref, 1 for ref/mut, 2 for mut/mut and -1 for missing values. The input file should be a text file.
the name of the genotype file.
the name of the indexed genotype file.
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