Man pages for dgrtwo/GSEAMA
Gene set enrichment analysis made awesome
| assign_genes_to_paths | Assign Genes to Paths |
| CompareTopColumns | Create a graph comparing the top n columns (in terms of... |
| CompareTopSets | Create a graph comparing the top n columns (in terms of... |
| CompareY | Create a violin plot, boxplot or histogram looking at the... |
| ExtractGenes | Return all genes, along with the saved metric in each of the... |
| find_minimal_rooted_tree | Find Minimal Rooted Tree |
| GenerateNetwork | Create an igraph from a GeneMatrix representing GO terms |
| GenerateTreemap | Generate Treemap |
| get_ancestry_matrix | Build an offspring matrix of GO terms |
| GetEdgesTable | Create a data frame of edges from a GO term matrix |
| GetGORelatives | Get all GO IDs in all_IDs that are ancestors/descendants of... |
| GOMembershipMatrix | Construct a new gene set membership matrix |
| mean_difference | Compute mean differences between "in a set" and "not in a... |
| PlotNetwork | Plot a network from an igraph representation |
| sparse_cast | Create a sparse matrix from row names, column names, and... |
| sparse_cast_ | Standard-evaluation version of sparse_cast |
| TestAssociation | Test association of a per-gene attribute with each column in... |
| ThresholdSets | Return a vector of genes that pass a threshold for includions |
| trim_ellipses | Trim the length of a character vector, adding ellipses to... |
| vectorized_t_test | Perform a Student's T-test comparing a metric to each column... |
| vectorized_wilcoxon_test | Perform a Wilcoxon rank-sum test comparing a metric to each... |
