GetEdgesTable: Create a data frame of edges from a GO term matrix

In dgrtwo/GSEAMA: Gene set enrichment analysis made awesome

Description

Create a data frame of edges from a GO term matrix

Usage

GetEdgesTable(m, sets = NULL, ancestors = TRUE, ontology = c("BP", "MF",
  "CC"), ...)

Arguments

m	GeneMatrix object representing GO terms
sets	Gene sets to use in the network. If NULL, use ThresholdSets to find them
ancestors	Whether to include all ancestors of significant in the matrix
ontology	Which of BP, MF, and CC to use (default all three)
...	Extra arguments passed on to threshold_sets

Value

An igraph

dgrtwo/GSEAMA documentation built on May 15, 2019, 7:22 a.m.