build_coal_tree: Generate a Newick string representation of a tree...

In dhelekal/CaveDive: Phylodynamics for Clonal Expansion

Generate a Newick string representation of a tree corresponding to a realisation of a coalescent process. Note: the topology is RANDOM, If you wish for the topology to be consistent, use set.seed before calling this function.

Description

Generate a Newick string representation of a tree corresponding to a realisation of a coalescent process. Note: the topology is RANDOM, If you wish for the topology to be consistent, use set.seed before calling this function.

Usage

build_coal_tree(
  sampling_times,
  coalescent_times,
  leaf_names = NULL,
  node_name_prefix = "N",
  terminate_string = TRUE
)

Arguments

sampling_times	times of leaves.
coalescent_times	times of coalescent events / internal nodes.

Value

a Newick string corresponding to the tree.

dhelekal/CaveDive documentation built on June 11, 2024, 4:32 p.m.