plot_event_summary: Plots mcmc output as several panels

In dhelekal/CaveDive: Phylodynamics for Clonal Expansion

Plots mcmc output as several panels

Description

Plots mcmc output as several panels

Usage

plot_event_summary(
  mcmc.df,
  event.df,
  which_br,
  pre,
  prior_N = NULL,
  prior_t_mid_given_N = NULL,
  prior_K_given_N = NULL,
  prior_t_given_N = NULL
)

Arguments

mcmc.df	mcmc.df returned by mcmc2data.frame
event.df	event.df returned by mcmc2data.frame
which_br	Which branch to generate marginals for
pre	Preprocessed phylogeny
prior_N	(Optional) Background population size prior, mutually exclusive with passing list of priors. If either is supplied priors will be overlayed in plotting.
prior_t_mid_given_N	(Optional) Time to midpoint prior, mutually exclusive with passing list of priors. If either is supplied priors will be overlayed in plotting.
prior_K_given_N	(Optional) Expansion time prior, mutually exclusive with passing list of priors. If either is supplied priors will be overlayed in plotting.

Value

a list of 3 plot panels

dhelekal/CaveDive documentation built on June 11, 2024, 4:32 p.m.