expansions_simulate: Simulate parameters and event times for a genealogy with...

In dhelekal/CaveDive: Phylodynamics for Clonal Expansion

Simulate parameters and event times for a genealogy with clonal expansionss

Description

Simulate parameters and event times for a genealogy with clonal expansionss

Usage

expansions_simulate(priors, sampling_times, concentration, given = list())

Arguments

priors	List of priors to simulate parameters from. See 'standard priors' for details
sampling_times	Vector sampling times, entries must be negative or 0
concentration	Scalar concentration hyperparameter for dirichlet expansion model
given	A list of variables with values given. Supported names: 'n_exp' - number of expansions, 'tip_colours' - tip expansion assignment, N' - Background population size, 'K' - Expansion carrying capacities, 't_mid' - Expansion times to midpoints, 'div_times' - Expansion divergence times, 'div_from' - parent lineages

Value

list of: 'co' - realisation of the prpcess, 'params' - the simulated parameters for the process, 'coal_log_lh' - the process likelihood, 'param_log_lh' - the prior likelihood

dhelekal/CaveDive documentation built on June 11, 2024, 4:32 p.m.