inhomogenous_coal.log_lh: Compute likelihood of a realisation of an inhomogeneous...
In dhelekal/CaveDive: Phylodynamics for Clonal Expansion
View source: R/inhomogenous_coal.R
inhomogenous_coal.log_lh R Documentation
Compute likelihood of a realisation of an inhomogeneous coalescent.
Description
Compute likelihood of a realisation of an inhomogeneous coalescent.
Usage
inhomogenous_coal.log_lh(
sampling_times,
coalescent_times,
Neg.rate,
Neg.rate.int
)
Arguments
sampling_times
times of leaves.
coalescent_times
times of coalescent events.
Neg.rate
function equal to 1/Neg(t).
Neg.rate.int
integral of 1/Neg(t) from t to t+s.
Value
the log likelihood for the given parameters.
dhelekal/CaveDive documentation built on June 11, 2024, 4:32 p.m.
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View source: R/inhomogenous_coal.R
| inhomogenous_coal.log_lh | R Documentation |
Compute likelihood of a realisation of an inhomogeneous coalescent.
Description
Compute likelihood of a realisation of an inhomogeneous coalescent.
Usage
inhomogenous_coal.log_lh(
sampling_times,
coalescent_times,
Neg.rate,
Neg.rate.int
)
Arguments
sampling_times |
times of leaves. |
coalescent_times |
times of coalescent events. |
Neg.rate |
function equal to 1/Neg(t). |
Neg.rate.int |
integral of 1/Neg(t) from |
Value
the log likelihood for the given parameters.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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