plot.sample.cr: Default Plotting Statement for Mark-Recapture Sample Object.

In dill/wisp: Wildlife Simulation Package (wisp)

Description

This function generates a graphical representation of the specified 'sample.cr´ object.

Usage

        plot(samp, which.occasion = 0, show.sizes = TRUE, show.exps = TRUE, dsf = 0.75,
             whole.population = FALSE, type = "hist")

Arguments

samp	object of class 'sample.cr´.
which.occasion	specifies the survey occasion from which catches are shown in the output.
show.sizes	if TRUE, different animal group sizes are shown as dots of different sizes.
show.exps	if TRUE different group exposures are shown in different shading.
dsf	enlargement factor for group dots.
whole.population	if TRUE undetected animal groups will be black, as well as the detected animal groups in red
type	if "locations", the locations of the animals in the survey region is show, elese plots of capute histories are shown

Details

This function shows which animals/groups were captured on a mark-recatpure survey. It shows a picture of the region and indicates the detected animal groups using red dots. If which.occasion is set 0 the removals from all occasions are shown.

See Also

setpars.survey.cr, generate.sample.cr summary.sample.cr

Examples

cr.reg<-generate.region(x.length=100, y.width=50)
cr.dens <- generate.density(cr.reg)

cr.poppars<-setpars.population(density.pop = cr.dens, number.groups = 100, size.method = "poisson",
                               size.min = 1, size.max = 5, size.mean = 1, exposure.method = "beta",
                               exposure.min = 2, exposure.max = 10, exposure.mean = 3,
                               exposure.shape = 0.5, type.values = c("Male","Female"),
                               type.prob = c(0.48,0.52))
cr.pop<-generate.population(cr.poppars)

cr.des<-generate.design.cr(cr.reg, n.occ = 4)
cr.survpars<-setpars.survey.cr(cr.pop, cr.des, pmin.unmarked=0.00001, pmax.unmarked=0.5, improvement=0.01)
cr.samp<-generate.sample.cr(cr.survpars)

plot(cr.samp)
plot(cr.samp,type="locations", whole.population=TRUE, which.occ=0)
plot(cr.samp,type="locations", whole.population=TRUE, which.occ=1)
plot(cr.samp,type="locations", whole.population=TRUE, which.occ=2)

dill/wisp documentation built on May 15, 2019, 8:31 a.m.