plot.sample.rm: Default Plotting Statement for Removal Method Sample Object

Description Usage Arguments Details See Also Examples

Description

This function generates a graphical representation of the specified 'sample.rm´ object.

Usage

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        plot(samp, which.occasion = 0, show.sizes = TRUE, show.exps = TRUE, dsf = 1, whole.population = FALSE)

Arguments

samp

object of class 'sample.rm´.

which.occasion

specifies the survey occasion from which catches are shown in red in the output. If this is anything other than 0, captures from other occasions are shown in blue.

show.sizes

if TRUE, different animal group sizes are shown as dots of different sizes.

show.exps

if TRUE different group exposures are shown in different shading.

dsf

enlargement factor for dots.

whole.population

if TRUE detected animal groups will be shown in red; undetected animal groups will be black.

Details

This function shows which animals/groups were captured on a catch-effort survey. It shows a picture of the region and indicates the detected animal groups using red dots. If wich.occasion is set 0 the removals from all occasions are shown.

See Also

setpars.survey.rm, generate.sample.rm summary.sample.rm

Examples

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rm.reg<-generate.region(x.length=100, y.width=50)
rm.dens <- generate.density(rm.reg)

rm.poppars<-setpars.population(density.pop = rm.dens, number.groups = 100, size.method = "poisson",
                               size.min = 1, size.max = 5, size.mean = 1, exposure.method = "beta",
                               exposure.min = 2, exposure.max = 10, exposure.mean = 3,
                               exposure.shape = 0.5, type.values=c("Male","Female"),
                               type.prob=c(0.48,0.52))
rm.pop<-generate.population(rm.poppars)
rm.des<-generate.design.rm(rm.reg, n.occ = 5, effort=c(1,2,3,2,1))
rm.survpars<-setpars.survey.rm(pop=rm.pop, des=rm.des, pmin=0.03, pmax=0.95, improvement=0.05)
rm.samp<-generate.sample.rm(rm.survpars)

plot(rm.samp,whole.population=TRUE) 

dill/wisp documentation built on May 15, 2019, 8:31 a.m.