xQTLquery_sampleByTissue: Query details of samples by tissue name
In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'
xQTLquery_sampleByTissue R Documentation
Query details of samples by tissue name
Description
Query details of samples by tissue name
Usage
xQTLquery_sampleByTissue(
tissueSiteDetail = "Liver",
dataType = "RNASEQ",
recordPerChunk = 200,
pathologyNotesCategories = FALSE
)
Arguments
tissueSiteDetail
(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7
dataType
A character string. Options: "RNASEQ" (default), "WGS", "WES", "OMNI", "EXCLUDE".
recordPerChunk
(integer) number of records fetched per request (default: 200).
pathologyNotesCategories
Default: pathologyNotes info is ignored.
Value
returen a data.table object of samples' information
Examples
sampleInfo <- xQTLquery_sampleByTissue("Brain - Amygdala" )
sampleInfo <- xQTLquery_sampleByTissue(tissueSiteDetail="Liver", pathologyNotesCategories=TRUE)
dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.
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| xQTLquery_sampleByTissue | R Documentation |
Query details of samples by tissue name
Description
Query details of samples by tissue name
Usage
xQTLquery_sampleByTissue(
tissueSiteDetail = "Liver",
dataType = "RNASEQ",
recordPerChunk = 200,
pathologyNotesCategories = FALSE
)
Arguments
tissueSiteDetail |
(character) details of tissues in GTEx can be listed using |
dataType |
A character string. Options: "RNASEQ" (default), "WGS", "WES", "OMNI", "EXCLUDE". |
recordPerChunk |
(integer) number of records fetched per request (default: 200). |
pathologyNotesCategories |
Default: pathologyNotes info is ignored. |
Value
returen a data.table object of samples' information
Examples
sampleInfo <- xQTLquery_sampleByTissue("Brain - Amygdala" )
sampleInfo <- xQTLquery_sampleByTissue(tissueSiteDetail="Liver", pathologyNotesCategories=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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